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:mod:`statistics` --- Mathematical statistics functions
=======================================================
.. module:: statistics
:synopsis: Mathematical statistics functions
.. moduleauthor:: Steven D'Aprano <steve+python@pearwood.info>
.. sectionauthor:: Steven D'Aprano <steve+python@pearwood.info>
.. versionadded:: 3.4
**Source code:** :source:`Lib/statistics.py`
.. testsetup:: *
from statistics import *
__name__ = '<doctest>'
--------------
This module provides functions for calculating mathematical statistics of
numeric (:class:`~numbers.Real`-valued) data.
The module is not intended to be a competitor to third-party libraries such
as `NumPy <https://numpy.org>`_, `SciPy <https://www.scipy.org/>`_, or
proprietary full-featured statistics packages aimed at professional
statisticians such as Minitab, SAS and Matlab. It is aimed at the level of
graphing and scientific calculators.
Unless explicitly noted, these functions support :class:`int`,
:class:`float`, :class:`~decimal.Decimal` and :class:`~fractions.Fraction`.
Behaviour with other types (whether in the numeric tower or not) is
currently unsupported. Collections with a mix of types are also undefined
and implementation-dependent. If your input data consists of mixed types,
you may be able to use :func:`map` to ensure a consistent result, for
example: ``map(float, input_data)``.
Averages and measures of central location
-----------------------------------------
These functions calculate an average or typical value from a population
or sample.
======================= ===============================================================
:func:`mean` Arithmetic mean ("average") of data.
:func:`fmean` Fast, floating point arithmetic mean.
:func:`geometric_mean` Geometric mean of data.
:func:`harmonic_mean` Harmonic mean of data.
:func:`median` Median (middle value) of data.
:func:`median_low` Low median of data.
:func:`median_high` High median of data.
:func:`median_grouped` Median, or 50th percentile, of grouped data.
:func:`mode` Single mode (most common value) of discrete or nominal data.
:func:`multimode` List of modes (most common values) of discrete or nomimal data.
:func:`quantiles` Divide data into intervals with equal probability.
======================= ===============================================================
Measures of spread
------------------
These functions calculate a measure of how much the population or sample
tends to deviate from the typical or average values.
======================= =============================================
:func:`pstdev` Population standard deviation of data.
:func:`pvariance` Population variance of data.
:func:`stdev` Sample standard deviation of data.
:func:`variance` Sample variance of data.
======================= =============================================
Function details
----------------
Note: The functions do not require the data given to them to be sorted.
However, for reading convenience, most of the examples show sorted sequences.
.. function:: mean(data)
Return the sample arithmetic mean of *data* which can be a sequence or iterable.
The arithmetic mean is the sum of the data divided by the number of data
points. It is commonly called "the average", although it is only one of many
different mathematical averages. It is a measure of the central location of
the data.
If *data* is empty, :exc:`StatisticsError` will be raised.
Some examples of use:
.. doctest::
>>> mean([1, 2, 3, 4, 4])
2.8
>>> mean([-1.0, 2.5, 3.25, 5.75])
2.625
>>> from fractions import Fraction as F
>>> mean([F(3, 7), F(1, 21), F(5, 3), F(1, 3)])
Fraction(13, 21)
>>> from decimal import Decimal as D
>>> mean([D("0.5"), D("0.75"), D("0.625"), D("0.375")])
Decimal('0.5625')
.. note::
The mean is strongly affected by outliers and is not a robust estimator
for central location: the mean is not necessarily a typical example of
the data points. For more robust measures of central location, see
:func:`median` and :func:`mode`.
The sample mean gives an unbiased estimate of the true population mean,
so that when taken on average over all the possible samples,
``mean(sample)`` converges on the true mean of the entire population. If
*data* represents the entire population rather than a sample, then
``mean(data)`` is equivalent to calculating the true population mean μ.
.. function:: fmean(data)
Convert *data* to floats and compute the arithmetic mean.
This runs faster than the :func:`mean` function and it always returns a
:class:`float`. The *data* may be a sequence or iterable. If the input
dataset is empty, raises a :exc:`StatisticsError`.
.. doctest::
>>> fmean([3.5, 4.0, 5.25])
4.25
.. versionadded:: 3.8
.. function:: geometric_mean(data)
Convert *data* to floats and compute the geometric mean.
The geometric mean indicates the central tendency or typical value of the
*data* using the product of the values (as opposed to the arithmetic mean
which uses their sum).
Raises a :exc:`StatisticsError` if the input dataset is empty,
if it contains a zero, or if it contains a negative value.
The *data* may be a sequence or iterable.
No special efforts are made to achieve exact results.
(However, this may change in the future.)
.. doctest::
>>> round(geometric_mean([54, 24, 36]), 1)
36.0
.. versionadded:: 3.8
.. function:: harmonic_mean(data)
Return the harmonic mean of *data*, a sequence or iterable of
real-valued numbers.
The harmonic mean, sometimes called the subcontrary mean, is the
reciprocal of the arithmetic :func:`mean` of the reciprocals of the
data. For example, the harmonic mean of three values *a*, *b* and *c*
will be equivalent to ``3/(1/a + 1/b + 1/c)``. If one of the values
is zero, the result will be zero.
The harmonic mean is a type of average, a measure of the central
location of the data. It is often appropriate when averaging
rates or ratios, for example speeds.
Suppose a car travels 10 km at 40 km/hr, then another 10 km at 60 km/hr.
What is the average speed?
.. doctest::
>>> harmonic_mean([40, 60])
48.0
Suppose an investor purchases an equal value of shares in each of
three companies, with P/E (price/earning) ratios of 2.5, 3 and 10.
What is the average P/E ratio for the investor's portfolio?
.. doctest::
>>> harmonic_mean([2.5, 3, 10]) # For an equal investment portfolio.
3.6
:exc:`StatisticsError` is raised if *data* is empty, or any element
is less than zero.
The current algorithm has an early-out when it encounters a zero
in the input. This means that the subsequent inputs are not tested
for validity. (This behavior may change in the future.)
.. versionadded:: 3.6
.. function:: median(data)
Return the median (middle value) of numeric data, using the common "mean of
middle two" method. If *data* is empty, :exc:`StatisticsError` is raised.
*data* can be a sequence or iterable.
The median is a robust measure of central location and is less affected by
the presence of outliers. When the number of data points is odd, the
middle data point is returned:
.. doctest::
>>> median([1, 3, 5])
3
When the number of data points is even, the median is interpolated by taking
the average of the two middle values:
.. doctest::
>>> median([1, 3, 5, 7])
4.0
This is suited for when your data is discrete, and you don't mind that the
median may not be an actual data point.
If the data is ordinal (supports order operations) but not numeric (doesn't
support addition), consider using :func:`median_low` or :func:`median_high`
instead.
.. function:: median_low(data)
Return the low median of numeric data. If *data* is empty,
:exc:`StatisticsError` is raised. *data* can be a sequence or iterable.
The low median is always a member of the data set. When the number of data
points is odd, the middle value is returned. When it is even, the smaller of
the two middle values is returned.
.. doctest::
>>> median_low([1, 3, 5])
3
>>> median_low([1, 3, 5, 7])
3
Use the low median when your data are discrete and you prefer the median to
be an actual data point rather than interpolated.
.. function:: median_high(data)
Return the high median of data. If *data* is empty, :exc:`StatisticsError`
is raised. *data* can be a sequence or iterable.
The high median is always a member of the data set. When the number of data
points is odd, the middle value is returned. When it is even, the larger of
the two middle values is returned.
.. doctest::
>>> median_high([1, 3, 5])
3
>>> median_high([1, 3, 5, 7])
5
Use the high median when your data are discrete and you prefer the median to
be an actual data point rather than interpolated.
.. function:: median_grouped(data, interval=1)
Return the median of grouped continuous data, calculated as the 50th
percentile, using interpolation. If *data* is empty, :exc:`StatisticsError`
is raised. *data* can be a sequence or iterable.
.. doctest::
>>> median_grouped([52, 52, 53, 54])
52.5
In the following example, the data are rounded, so that each value represents
the midpoint of data classes, e.g. 1 is the midpoint of the class 0.5--1.5, 2
is the midpoint of 1.5--2.5, 3 is the midpoint of 2.5--3.5, etc. With the data
given, the middle value falls somewhere in the class 3.5--4.5, and
interpolation is used to estimate it:
.. doctest::
>>> median_grouped([1, 2, 2, 3, 4, 4, 4, 4, 4, 5])
3.7
Optional argument *interval* represents the class interval, and defaults
to 1. Changing the class interval naturally will change the interpolation:
.. doctest::
>>> median_grouped([1, 3, 3, 5, 7], interval=1)
3.25
>>> median_grouped([1, 3, 3, 5, 7], interval=2)
3.5
This function does not check whether the data points are at least
*interval* apart.
.. impl-detail::
Under some circumstances, :func:`median_grouped` may coerce data points to
floats. This behaviour is likely to change in the future.
.. seealso::
* "Statistics for the Behavioral Sciences", Frederick J Gravetter and
Larry B Wallnau (8th Edition).
* The `SSMEDIAN
<https://help.gnome.org/users/gnumeric/stable/gnumeric.html#gnumeric-function-SSMEDIAN>`_
function in the Gnome Gnumeric spreadsheet, including `this discussion
<https://mail.gnome.org/archives/gnumeric-list/2011-April/msg00018.html>`_.
.. function:: mode(data)
Return the single most common data point from discrete or nominal *data*.
The mode (when it exists) is the most typical value and serves as a
measure of central location.
If there are multiple modes with the same frequency, returns the first one
encountered in the *data*. If the smallest or largest of those is
desired instead, use ``min(multimode(data))`` or ``max(multimode(data))``.
If the input *data* is empty, :exc:`StatisticsError` is raised.
``mode`` assumes discrete data and returns a single value. This is the
standard treatment of the mode as commonly taught in schools:
.. doctest::
>>> mode([1, 1, 2, 3, 3, 3, 3, 4])
3
The mode is unique in that it is the only statistic in this package that
also applies to nominal (non-numeric) data:
.. doctest::
>>> mode(["red", "blue", "blue", "red", "green", "red", "red"])
'red'
.. versionchanged:: 3.8
Now handles multimodal datasets by returning the first mode encountered.
Formerly, it raised :exc:`StatisticsError` when more than one mode was
found.
.. function:: multimode(data)
Return a list of the most frequently occurring values in the order they
were first encountered in the *data*. Will return more than one result if
there are multiple modes or an empty list if the *data* is empty:
.. doctest::
>>> multimode('aabbbbccddddeeffffgg')
['b', 'd', 'f']
>>> multimode('')
[]
.. versionadded:: 3.8
.. function:: pstdev(data, mu=None)
Return the population standard deviation (the square root of the population
variance). See :func:`pvariance` for arguments and other details.
.. doctest::
>>> pstdev([1.5, 2.5, 2.5, 2.75, 3.25, 4.75])
0.986893273527251
.. function:: pvariance(data, mu=None)
Return the population variance of *data*, a non-empty sequence or iterable
of real-valued numbers. Variance, or second moment about the mean, is a
measure of the variability (spread or dispersion) of data. A large
variance indicates that the data is spread out; a small variance indicates
it is clustered closely around the mean.
If the optional second argument *mu* is given, it is typically the mean of
the *data*. It can also be used to compute the second moment around a
point that is not the mean. If it is missing or ``None`` (the default),
the arithmetic mean is automatically calculated.
Use this function to calculate the variance from the entire population. To
estimate the variance from a sample, the :func:`variance` function is usually
a better choice.
Raises :exc:`StatisticsError` if *data* is empty.
Examples:
.. doctest::
>>> data = [0.0, 0.25, 0.25, 1.25, 1.5, 1.75, 2.75, 3.25]
>>> pvariance(data)
1.25
If you have already calculated the mean of your data, you can pass it as the
optional second argument *mu* to avoid recalculation:
.. doctest::
>>> mu = mean(data)
>>> pvariance(data, mu)
1.25
Decimals and Fractions are supported:
.. doctest::
>>> from decimal import Decimal as D
>>> pvariance([D("27.5"), D("30.25"), D("30.25"), D("34.5"), D("41.75")])
Decimal('24.815')
>>> from fractions import Fraction as F
>>> pvariance([F(1, 4), F(5, 4), F(1, 2)])
Fraction(13, 72)
.. note::
When called with the entire population, this gives the population variance
σ². When called on a sample instead, this is the biased sample variance
s², also known as variance with N degrees of freedom.
If you somehow know the true population mean μ, you may use this
function to calculate the variance of a sample, giving the known
population mean as the second argument. Provided the data points are a
random sample of the population, the result will be an unbiased estimate
of the population variance.
.. function:: stdev(data, xbar=None)
Return the sample standard deviation (the square root of the sample
variance). See :func:`variance` for arguments and other details.
.. doctest::
>>> stdev([1.5, 2.5, 2.5, 2.75, 3.25, 4.75])
1.0810874155219827
.. function:: variance(data, xbar=None)
Return the sample variance of *data*, an iterable of at least two real-valued
numbers. Variance, or second moment about the mean, is a measure of the
variability (spread or dispersion) of data. A large variance indicates that
the data is spread out; a small variance indicates it is clustered closely
around the mean.
If the optional second argument *xbar* is given, it should be the mean of
*data*. If it is missing or ``None`` (the default), the mean is
automatically calculated.
Use this function when your data is a sample from a population. To calculate
the variance from the entire population, see :func:`pvariance`.
Raises :exc:`StatisticsError` if *data* has fewer than two values.
Examples:
.. doctest::
>>> data = [2.75, 1.75, 1.25, 0.25, 0.5, 1.25, 3.5]
>>> variance(data)
1.3720238095238095
If you have already calculated the mean of your data, you can pass it as the
optional second argument *xbar* to avoid recalculation:
.. doctest::
>>> m = mean(data)
>>> variance(data, m)
1.3720238095238095
This function does not attempt to verify that you have passed the actual mean
as *xbar*. Using arbitrary values for *xbar* can lead to invalid or
impossible results.
Decimal and Fraction values are supported:
.. doctest::
>>> from decimal import Decimal as D
>>> variance([D("27.5"), D("30.25"), D("30.25"), D("34.5"), D("41.75")])
Decimal('31.01875')
>>> from fractions import Fraction as F
>>> variance([F(1, 6), F(1, 2), F(5, 3)])
Fraction(67, 108)
.. note::
This is the sample variance s² with Bessel's correction, also known as
variance with N-1 degrees of freedom. Provided that the data points are
representative (e.g. independent and identically distributed), the result
should be an unbiased estimate of the true population variance.
If you somehow know the actual population mean μ you should pass it to the
:func:`pvariance` function as the *mu* parameter to get the variance of a
sample.
.. function:: quantiles(data, *, n=4, method='exclusive')
Divide *data* into *n* continuous intervals with equal probability.
Returns a list of ``n - 1`` cut points separating the intervals.
Set *n* to 4 for quartiles (the default). Set *n* to 10 for deciles. Set
*n* to 100 for percentiles which gives the 99 cuts points that separate
*data* into 100 equal sized groups. Raises :exc:`StatisticsError` if *n*
is not least 1.
The *data* can be any iterable containing sample data. For meaningful
results, the number of data points in *data* should be larger than *n*.
Raises :exc:`StatisticsError` if there are not at least two data points.
The cut points are linearly interpolated from the
two nearest data points. For example, if a cut point falls one-third
of the distance between two sample values, ``100`` and ``112``, the
cut-point will evaluate to ``104``.
The *method* for computing quantiles can be varied depending on
whether the *data* includes or excludes the lowest and
highest possible values from the population.
The default *method* is "exclusive" and is used for data sampled from
a population that can have more extreme values than found in the
samples. The portion of the population falling below the *i-th* of
*m* sorted data points is computed as ``i / (m + 1)``. Given nine
sample values, the method sorts them and assigns the following
percentiles: 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%.
Setting the *method* to "inclusive" is used for describing population
data or for samples that are known to include the most extreme values
from the population. The minimum value in *data* is treated as the 0th
percentile and the maximum value is treated as the 100th percentile.
The portion of the population falling below the *i-th* of *m* sorted
data points is computed as ``(i - 1) / (m - 1)``. Given 11 sample
values, the method sorts them and assigns the following percentiles:
0%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 100%.
.. doctest::
# Decile cut points for empirically sampled data
>>> data = [105, 129, 87, 86, 111, 111, 89, 81, 108, 92, 110,
... 100, 75, 105, 103, 109, 76, 119, 99, 91, 103, 129,
... 106, 101, 84, 111, 74, 87, 86, 103, 103, 106, 86,
... 111, 75, 87, 102, 121, 111, 88, 89, 101, 106, 95,
... 103, 107, 101, 81, 109, 104]
>>> [round(q, 1) for q in quantiles(data, n=10)]
[81.0, 86.2, 89.0, 99.4, 102.5, 103.6, 106.0, 109.8, 111.0]
.. versionadded:: 3.8
Exceptions
----------
A single exception is defined:
.. exception:: StatisticsError
Subclass of :exc:`ValueError` for statistics-related exceptions.
:class:`NormalDist` objects
---------------------------
:class:`NormalDist` is a tool for creating and manipulating normal
distributions of a `random variable
<http://www.stat.yale.edu/Courses/1997-98/101/ranvar.htm>`_. It is a
class that treats the mean and standard deviation of data
measurements as a single entity.
Normal distributions arise from the `Central Limit Theorem
<https://en.wikipedia.org/wiki/Central_limit_theorem>`_ and have a wide range
of applications in statistics.
.. class:: NormalDist(mu=0.0, sigma=1.0)
Returns a new *NormalDist* object where *mu* represents the `arithmetic
mean <https://en.wikipedia.org/wiki/Arithmetic_mean>`_ and *sigma*
represents the `standard deviation
<https://en.wikipedia.org/wiki/Standard_deviation>`_.
If *sigma* is negative, raises :exc:`StatisticsError`.
.. attribute:: mean
A read-only property for the `arithmetic mean
<https://en.wikipedia.org/wiki/Arithmetic_mean>`_ of a normal
distribution.
.. attribute:: median
A read-only property for the `median
<https://en.wikipedia.org/wiki/Median>`_ of a normal
distribution.
.. attribute:: mode
A read-only property for the `mode
<https://en.wikipedia.org/wiki/Mode_(statistics)>`_ of a normal
distribution.
.. attribute:: stdev
A read-only property for the `standard deviation
<https://en.wikipedia.org/wiki/Standard_deviation>`_ of a normal
distribution.
.. attribute:: variance
A read-only property for the `variance
<https://en.wikipedia.org/wiki/Variance>`_ of a normal
distribution. Equal to the square of the standard deviation.
.. classmethod:: NormalDist.from_samples(data)
Makes a normal distribution instance with *mu* and *sigma* parameters
estimated from the *data* using :func:`fmean` and :func:`stdev`.
The *data* can be any :term:`iterable` and should consist of values
that can be converted to type :class:`float`. If *data* does not
contain at least two elements, raises :exc:`StatisticsError` because it
takes at least one point to estimate a central value and at least two
points to estimate dispersion.
.. method:: NormalDist.samples(n, *, seed=None)
Generates *n* random samples for a given mean and standard deviation.
Returns a :class:`list` of :class:`float` values.
If *seed* is given, creates a new instance of the underlying random
number generator. This is useful for creating reproducible results,
even in a multi-threading context.
.. method:: NormalDist.pdf(x)
Using a `probability density function (pdf)
<https://en.wikipedia.org/wiki/Probability_density_function>`_, compute
the relative likelihood that a random variable *X* will be near the
given value *x*. Mathematically, it is the limit of the ratio ``P(x <=
X < x+dx) / dx`` as *dx* approaches zero.
The relative likelihood is computed as the probability of a sample
occurring in a narrow range divided by the width of the range (hence
the word "density"). Since the likelihood is relative to other points,
its value can be greater than `1.0`.
.. method:: NormalDist.cdf(x)
Using a `cumulative distribution function (cdf)
<https://en.wikipedia.org/wiki/Cumulative_distribution_function>`_,
compute the probability that a random variable *X* will be less than or
equal to *x*. Mathematically, it is written ``P(X <= x)``.
.. method:: NormalDist.inv_cdf(p)
Compute the inverse cumulative distribution function, also known as the
`quantile function <https://en.wikipedia.org/wiki/Quantile_function>`_
or the `percent-point
<https://www.statisticshowto.datasciencecentral.com/inverse-distribution-function/>`_
function. Mathematically, it is written ``x : P(X <= x) = p``.
Finds the value *x* of the random variable *X* such that the
probability of the variable being less than or equal to that value
equals the given probability *p*.
.. method:: NormalDist.overlap(other)
Measures the agreement between two normal probability distributions.
Returns a value between 0.0 and 1.0 giving `the overlapping area for
the two probability density functions
<https://www.rasch.org/rmt/rmt101r.htm>`_.
.. method:: NormalDist.quantiles(n=4)
Divide the normal distribution into *n* continuous intervals with
equal probability. Returns a list of (n - 1) cut points separating
the intervals.
Set *n* to 4 for quartiles (the default). Set *n* to 10 for deciles.
Set *n* to 100 for percentiles which gives the 99 cuts points that
separate the normal distribution into 100 equal sized groups.
Instances of :class:`NormalDist` support addition, subtraction,
multiplication and division by a constant. These operations
are used for translation and scaling. For example:
.. doctest::
>>> temperature_february = NormalDist(5, 2.5) # Celsius
>>> temperature_february * (9/5) + 32 # Fahrenheit
NormalDist(mu=41.0, sigma=4.5)
Dividing a constant by an instance of :class:`NormalDist` is not supported
because the result wouldn't be normally distributed.
Since normal distributions arise from additive effects of independent
variables, it is possible to `add and subtract two independent normally
distributed random variables
<https://en.wikipedia.org/wiki/Sum_of_normally_distributed_random_variables>`_
represented as instances of :class:`NormalDist`. For example:
.. doctest::
>>> birth_weights = NormalDist.from_samples([2.5, 3.1, 2.1, 2.4, 2.7, 3.5])
>>> drug_effects = NormalDist(0.4, 0.15)
>>> combined = birth_weights + drug_effects
>>> round(combined.mean, 1)
3.1
>>> round(combined.stdev, 1)
0.5
.. versionadded:: 3.8
:class:`NormalDist` Examples and Recipes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
:class:`NormalDist` readily solves classic probability problems.
For example, given `historical data for SAT exams
<https://nces.ed.gov/programs/digest/d17/tables/dt17_226.40.asp>`_ showing
that scores are normally distributed with a mean of 1060 and a standard
deviation of 195, determine the percentage of students with test scores
between 1100 and 1200, after rounding to the nearest whole number:
.. doctest::
>>> sat = NormalDist(1060, 195)
>>> fraction = sat.cdf(1200 + 0.5) - sat.cdf(1100 - 0.5)
>>> round(fraction * 100.0, 1)
18.4
Find the `quartiles <https://en.wikipedia.org/wiki/Quartile>`_ and `deciles
<https://en.wikipedia.org/wiki/Decile>`_ for the SAT scores:
.. doctest::
>>> list(map(round, sat.quantiles()))
[928, 1060, 1192]
>>> list(map(round, sat.quantiles(n=10)))
[810, 896, 958, 1011, 1060, 1109, 1162, 1224, 1310]
To estimate the distribution for a model than isn't easy to solve
analytically, :class:`NormalDist` can generate input samples for a `Monte
Carlo simulation <https://en.wikipedia.org/wiki/Monte_Carlo_method>`_:
.. doctest::
>>> def model(x, y, z):
... return (3*x + 7*x*y - 5*y) / (11 * z)
...
>>> n = 100_000
>>> X = NormalDist(10, 2.5).samples(n, seed=3652260728)
>>> Y = NormalDist(15, 1.75).samples(n, seed=4582495471)
>>> Z = NormalDist(50, 1.25).samples(n, seed=6582483453)
>>> quantiles(map(model, X, Y, Z)) # doctest: +SKIP
[1.4591308524824727, 1.8035946855390597, 2.175091447274739]
Normal distributions can be used to approximate `Binomial
distributions <http://mathworld.wolfram.com/BinomialDistribution.html>`_
when the sample size is large and when the probability of a successful
trial is near 50%.
For example, an open source conference has 750 attendees and two rooms with a
500 person capacity. There is a talk about Python and another about Ruby.
In previous conferences, 65% of the attendees preferred to listen to Python
talks. Assuming the population preferences haven't changed, what is the
probability that the Python room will stay within its capacity limits?
.. doctest::
>>> n = 750 # Sample size
>>> p = 0.65 # Preference for Python
>>> q = 1.0 - p # Preference for Ruby
>>> k = 500 # Room capacity
>>> # Approximation using the cumulative normal distribution
>>> from math import sqrt
>>> round(NormalDist(mu=n*p, sigma=sqrt(n*p*q)).cdf(k + 0.5), 4)
0.8402
>>> # Solution using the cumulative binomial distribution
>>> from math import comb, fsum
>>> round(fsum(comb(n, r) * p**r * q**(n-r) for r in range(k+1)), 4)
0.8402
>>> # Approximation using a simulation
>>> from random import seed, choices
>>> seed(8675309)
>>> def trial():
... return choices(('Python', 'Ruby'), (p, q), k=n).count('Python')
>>> mean(trial() <= k for i in range(10_000))
0.8398
Normal distributions commonly arise in machine learning problems.
Wikipedia has a `nice example of a Naive Bayesian Classifier
<https://en.wikipedia.org/wiki/Naive_Bayes_classifier#Sex_classification>`_.
The challenge is to predict a person's gender from measurements of normally
distributed features including height, weight, and foot size.
We're given a training dataset with measurements for eight people. The
measurements are assumed to be normally distributed, so we summarize the data
with :class:`NormalDist`:
.. doctest::
>>> height_male = NormalDist.from_samples([6, 5.92, 5.58, 5.92])
>>> height_female = NormalDist.from_samples([5, 5.5, 5.42, 5.75])
>>> weight_male = NormalDist.from_samples([180, 190, 170, 165])
>>> weight_female = NormalDist.from_samples([100, 150, 130, 150])
>>> foot_size_male = NormalDist.from_samples([12, 11, 12, 10])
>>> foot_size_female = NormalDist.from_samples([6, 8, 7, 9])
Next, we encounter a new person whose feature measurements are known but whose
gender is unknown:
.. doctest::
>>> ht = 6.0 # height
>>> wt = 130 # weight
>>> fs = 8 # foot size
Starting with a 50% `prior probability
<https://en.wikipedia.org/wiki/Prior_probability>`_ of being male or female,
we compute the posterior as the prior times the product of likelihoods for the
feature measurements given the gender:
.. doctest::
>>> prior_male = 0.5
>>> prior_female = 0.5
>>> posterior_male = (prior_male * height_male.pdf(ht) *
... weight_male.pdf(wt) * foot_size_male.pdf(fs))
>>> posterior_female = (prior_female * height_female.pdf(ht) *
... weight_female.pdf(wt) * foot_size_female.pdf(fs))
The final prediction goes to the largest posterior. This is known as the
`maximum a posteriori
<https://en.wikipedia.org/wiki/Maximum_a_posteriori_estimation>`_ or MAP:
.. doctest::
>>> 'male' if posterior_male > posterior_female else 'female'
'female'
..
# This modelines must appear within the last ten lines of the file.
kate: indent-width 3; remove-trailing-space on; replace-tabs on; encoding utf-8;
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