diff --git a/Tools/scripts/build_ci.sh b/Tools/scripts/build_ci.sh
index 57e9082911..4dbc66c4bf 100755
--- a/Tools/scripts/build_ci.sh
+++ b/Tools/scripts/build_ci.sh
@@ -346,6 +346,9 @@ for t in $CI_BUILD_TARGET; do
         $waf configure --board Pixhawk6X-PPPGW
         $waf clean
         $waf AP_Periph
+        $waf configure --board Pixhawk6X-PPPGW --bootloader
+        $waf clean
+        $waf bootloader
         continue
     fi